Filtered trimed paired end transcriptome reads A.ventralis_13 - SRA

SRX4935220: Filtered trimed paired end transcriptome reads A.ventralis_13
1 ILLUMINA (Illumina HiSeq 2500) run: 54.3M spots, 10.7G bases, 4.2Gb downloads

Design: Two PE libraries with paired-end 100 bp reads separated by a ~200 bp gap between the reads, TruSeq RNA Library Prep Kit v2, Illumina

Submitted by: Oakland University

Study: Genomes, annotations and transcriptome of 3 Caribbean Parrots

PRJNA496322 • SRP166808 • All experiments • All runs

show Abstracthide Abstract

Genome wide data is used to assemble and annotate the genomes of three Amazon species from the Caribbean: Cuban amazon (Amazona leucocephala), Hispeniolan amazon (A. ventralis) and Puerto Rican parrot (A. vittata).Previously assembled A. vittata is improved on and used it as a reference genome to assemble the closely related species. Genes are annotated, interrogated for the signatures of historic selections, and species phylogeny is evaluated using the new data, and in the context of bird genome evolution.

Sample: Parrot13

SAMN10239471 • SRS3979606 • All experiments • All runs

Organism: Amazona ventralis

Library:

Name: A. ventralis_transcriptome_bld_13

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: unspecified

Layout: PAIRED

Runs: 1 run, 54.3M spots, 10.7G bases, 4.2Gb

Run	# of Spots	# of Bases	Size	Published
SRR8108624	54,252,408	10.7G	4.2Gb	2018-12-01

ID:: 6636580

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